GgaEX6012665 @ galGal4
Exon Skipping
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7580341-7582768:-
Coord C1 exon
chr14:7582670-7582768
Coord A exon
chr14:7581741-7581884
Coord C2 exon
chr14:7580341-7580436
Length
144 bp
Sequences
Splice sites
3' ss Seq
TACACTTCTTTGTCTTTTAGATG
3' ss Score
10.5
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
ATTTGCTTGAAAAATCCCGTGCTATTCGTCAGGCTAAAGATGAGCGAACATTTCATATCTTTTACTATTTGATTGCTGGAGCTTCTGAACAAATGAGAA
Seq A exon
ATGATCTGCTGCTGGAGGGCTTCAACAACTACACCTTTCTATCTAATGGTCACGTTCCTATTCCTGCTCAACAAGATGATGAGATGTTCCAGGAGACCTTGGAAGCAATGACAATTATGGGCTTTACTGAGGAGGAACAGACAT
Seq C2 exon
CTATACTGAGGGTTGTTTCGTCTGTCCTACAGCTGGGCAATATTGTCTTCAAGAAGGAGAGAAACACTGATCAAGCTTCTATGCCTGACAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-'16-11,'16-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(7.8=100)
C2:
PF0006316=Myosin_head=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTTGAAAAATCCCGTGCT
R:
CAGTATTGTCAGGCATAGAAGCT
Band lengths:
194-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]