DreEX6017870 @ danRer10
Exon Skipping
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36558503-36560081:-
Coord C1 exon
chr3:36559983-36560081
Coord A exon
chr3:36558675-36558818
Coord C2 exon
chr3:36558503-36558598
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACAGTCTTTCCCCTCCACAGAGG
3' ss Score
9.59
5' ss Seq
TAGGTGTCT
5' ss Score
-1.02
Exon sequences
Seq C1 exon
ACCTCCTGGAAAAGTCTCGCTGTATCCGACAGGCCAAAATCGAGAGATCCTTCCACATCTTCTACTATATGGTGGCTGGAGCAAAAGACAAAATGCGAG
Seq A exon
AGGAGCTCTTGCTAGAGGACTTTGCTAACTACCGTTTCCTGGTGGCTGGACATGTCCAGGTTCAAAACCAGCAAGATGACGAGATGTTAGAGGAGACTCTTGAGGCCATGGAGGTTCTGGGCTTCAACGAGGAAGAACGAATAG
Seq C2 exon
GCATGTTTAAAATCTGTTCTACTGTGCTGCAACTGGGCAATATTGAGTTCAAAGCAGAAAAAAACCAAGAGCAGGCCAGTATGCCAGACAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(7.2=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCTGGAAAAGTCTCGCT
R:
TGTGTTGTCTGGCATACTGGC
Band lengths:
194-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]