BtaEX6108690 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14263861-14276235:-
Coord C1 exon
chr25:14276137-14276235
Coord A exon
chr25:14272807-14272950
Coord C2 exon
chr25:14263861-14263958
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCCTGTCCTTCTAGATG
3' ss Score
11.49
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
ATCTGCTGGAAAAGTCACGTGCGATTCGCCAAGCCAGAGACGAGAGGACCTTCCACATCTTTTACTATCTGATTGCTGGAGCCAAGGAGAAGATGCGAA
Seq A exon
ATGACTTGCTTTTGGAAGGCTTCAACAACTACACATTCCTCTCCAATGGCTTTGTGCCCATCCCTGCCGCCCAGGATGATGAGATGTTCAATGAAACCGTGGAGGCCATGGCCATCATGGGGTTCACTGAGGAGGAGCAGCTGT
Seq C2 exon
CCATATTGAGGGTGGTGTCATCTGTCCTGCAACTTGGAAATATTGTCTTCAAGAAGGAAAGAAACACAGACCAGGCTTCCATGCCGGATAACACAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988-'13-13,'13-10,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.273
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGGAAAAGTCACGTGC
R:
ACCTGTGTTATCCGGCATGG
Band lengths:
196-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]