DreEX6017871 @ danRer10
Exon Skipping
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36558292-36558818:-
Coord C1 exon
chr3:36558675-36558818
Coord A exon
chr3:36558503-36558598
Coord C2 exon
chr3:36558292-36558410
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACGTGTTTTGCTTTTTTAAGGCA
3' ss Score
7.96
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AGGAGCTCTTGCTAGAGGACTTTGCTAACTACCGTTTCCTGGTGGCTGGACATGTCCAGGTTCAAAACCAGCAAGATGACGAGATGTTAGAGGAGACTCTTGAGGCCATGGAGGTTCTGGGCTTCAACGAGGAAGAACGAATAG
Seq A exon
GCATGTTTAAAATCTGTTCTACTGTGCTGCAACTGGGCAATATTGAGTTCAAAGCAGAAAAAAACCAAGAGCAGGCCAGTATGCCAGACAACACAG
Seq C2 exon
CTGCACAGAAAGTGTGCCATCTGCAGGGGATTAATGTGACTGACTTTACCAAAGCCATGCTCACTCCTAAAATCAAAGTGGGCCGAGAGCTGGTGCAGAAGGCACAGACCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.242 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
PF0006316=Myosin_head=FE(4.8=100)
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTCTTGAGGCCATGGA
R:
TCTTTGGTCTGTGCCTTCTGC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]