RnoEX6046038 @ rn6
Exon Skipping
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:805713-810830:+
Coord C1 exon
chr10:805713-805856
Coord A exon
chr10:808776-808871
Coord C2 exon
chr10:810712-810830
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTCCCTACTTCAGCCA
3' ss Score
7.98
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
ATGACCTACTTTTGGAGAGCTTCAACAGCTACACATTTTTATCCAATGGCTTTGTGCCCATCCCAGCTGCACAAGATGATGAGATGTTCCAGGAGACACTAGAGGCCATGTCCATCATGGGCTTCAGTGAAGAGGAACAGCTAG
Seq A exon
CCATCTTGAAGGTAGTATCATCCGTCCTTCAGCTTGGAAACATTGTCTTCAAGAAGGAGCGAAACACAGACCAGGCATCCATGCCTGATAACACAG
Seq C2 exon
CTGCTCAGAAAGTTTGCCACCTTGTGGGGATTAATGTGACAGATTTCACCAGAGCCATCCTGACCCCACGTATAAAAGTTGGACGGGATGTGGTGCAGAAAGCTCAGACCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-'19-21,'19-19,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGACACTAGAGGCCAT
R:
TTGGTCTGAGCTTTCTGCACC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]