MmuEX6060962 @ mm9
Exon Skipping
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14234446-14239632:-
Coord C1 exon
chr16:14239489-14239632
Coord A exon
chr16:14236462-14236557
Coord C2 exon
chr16:14234446-14234564
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTCCCTACTTCAGCCA
3' ss Score
7.98
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTGACCTGCTTTTGGAGAGCTTCAACAGCTACACATTTTTATCCAATGGCTTTGTGCCCATCCCAGCTGCACAAGATGATGAGATGTTCCAGGAGACACTGGAAGCCATGTCTATCATGGGCTTCAATGAAGAGGAACAGCTAG
Seq A exon
CCATCTTGAAGGTAGTATCATCTGTCCTTCAGCTTGGAAACATTGTCTTCAAGAAGGAGCGAAACACAGACCAGGCATCCATGCCTGATAACACAG
Seq C2 exon
CGGCTCAGAAAGTTTGCCACCTCGTGGGGATTAATGTGACAGATTTCACTAGAGCCATCCTGACCCCACGTATCAAAGTTGGACGGGATGTGGTGCAGAAGGCTCAGACCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACACTGGAAGCCATGT
R:
TTTGGTCTGAGCCTTCTGCAC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: