GgaEX6012666 @ galGal4
Exon Skipping
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7579855-7581884:-
Coord C1 exon
chr14:7581741-7581884
Coord A exon
chr14:7580341-7580436
Coord C2 exon
chr14:7579855-7579973
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACTATCTGCTTATCTTACAGCTA
3' ss Score
9.75
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
ATGATCTGCTGCTGGAGGGCTTCAACAACTACACCTTTCTATCTAATGGTCACGTTCCTATTCCTGCTCAACAAGATGATGAGATGTTCCAGGAGACCTTGGAAGCAATGACAATTATGGGCTTTACTGAGGAGGAACAGACAT
Seq A exon
CTATACTGAGGGTTGTTTCGTCTGTCCTACAGCTGGGCAATATTGTCTTCAAGAAGGAGAGAAACACTGATCAAGCTTCTATGCCTGACAATACTG
Seq C2 exon
CTGCTCAGAAGGTGTGTCACCTGATGGGGATTAATGTGACTGATTTCACAAGATCTATTCTAACCCCAAGGATCAAAGTAGGACGAGATGTTGTTCAGAAAGCTCAGACCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-'17-13,'17-11,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.8=100)
A:
PF0006316=Myosin_head=FE(5.2=100)
C2:
PF0006316=Myosin_head=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGGGCTTCAACAAC
R:
AATCCCCATCAGGTGACACAC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]