DreEX6017874 @ danRer10
Exon Skipping
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36556407-36557308:-
Coord C1 exon
chr3:36557156-36557308
Coord A exon
chr3:36556891-36557064
Coord C2 exon
chr3:36556407-36556580
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTATTTCCTCACAGGAT
3' ss Score
11.36
5' ss Seq
CCAGTCAGT
5' ss Score
0.29
Exon sequences
Seq C1 exon
GCTGACTTTGCAGTGGAAGCCTTGGCTAAGGCCATGTATGACCGTCTGTTTCGCTGGATCTTGGGCCGTGTCAACAAGGCTCTCGATAAAACAAAGCGTCAGGGAGCCTCTTTTATAGGCATCCTAGACATTGCAGGTTTTGAGATTTTTGAG
Seq A exon
GATAACTCATTCGAGCAGCTGTGCATCAACTACACCAACGAGAAACTGCAACAGCTCTTCAATCACACCATGTTCATCCTGGAGCAGGAGGAGTACAAGAAGGAAGGCATCGAGTGGAGCTTCATTGACTTTGGTCTGGACCTGCAGCCCTGCATTGAGCTCATCGAGAGACCA
Seq C2 exon
AACAACCCTCCAGGTATTCTTGCTCTGCTTGATGAGGAGTGCTGGTTTCCGAAGGCAACTGATGTTTCTTTTGTTGAGAAACTCACAAACACTCACTCAAGCCACTGCAAATTCTCCAAACCCAAGAATCTGAAGGAGAAGACTTTCTTCACTGTGCAACACTATGCCGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.5=100)
A:
PF0006316=Myosin_head=FE(8.5=100)
C2:
PF0006316=Myosin_head=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGCAGTGGAAGCCTTGG
R:
GCAGTGGCTTGAGTGAGTGTT
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]