BtaEX6108692 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14258424-14261219:-
Coord C1 exon
chr25:14261064-14261219
Coord A exon
chr25:14259732-14259905
Coord C2 exon
chr25:14258424-14258597
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCCTGGTGTTGTTGCTCAGGTG
3' ss Score
7.36
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
CAGGCAGACTTTGCCGTAGAAGCTTTGGCCAAGGCCACTTATGAGCGCCTTTTCCGCTGGATACTTACCCGAGTGAACAAAGCCCTGGACAAGACCCACCGGCAAGGGGCTTCGTTCCTGGGGATCCTGGACATTGCTGGGTTTGAGATCTTTGAG
Seq A exon
GTGAACTCATTCGAGCAGCTGTGTATCAACTACACCAATGAGAAGCTGCAGCAGCTCTTCAACCACACCATGTTCATCCTGGAGCAGGAGGAGTACCAGCGCGAGGGCATCGAATGGAACTTCATCGACTTCGGGCTGGACCTGCAGCCCTGCATTGAGCTCATCGAGCGGCCG
Seq C2 exon
ACCAACCCCCCAGGTGTGTTGGCCCTGCTGGACGAGGAGTGCTGGTTCCCCAAAGCCACAGACAAGTCTTTTGTGGAGAAGCTGTGCACGGAGCAGGGCAGCCACCCCAAGTTTCAGAAGCCCAAGCAGCTCAAGGACAAAACTGAATTCTCTATCATCCACTACGCCGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.4=100)
A:
PF0006316=Myosin_head=FE(8.3=100)
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTTCCGCTGGATACTT
R:
TTTGTCCTTGAGCTGCTTGGG
Band lengths:
252-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]