RnoEX0056982 @ rn6
Exon Skipping
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:811484-814456:+
Coord C1 exon
chr10:811484-811636
Coord A exon
chr10:812381-812554
Coord C2 exon
chr10:814283-814456
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATGCACATGCACAGGTA
3' ss Score
4.82
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCTGACTTTGCCATTGAGGCCTTAGCCAAGGCCACCTATGAGCGCCTTTTCCGATGGATTCTCAGCCGTGTGAACAAAGCCTTGGATAAGACCCATCGTCAGGGGGCCTCCTTCCTGGGCATTCTGGATATTGCTGGGTTTGAAATCTTTGAG
Seq A exon
GTAAACTCCTTCGAGCAGCTGTGCATCAACTACACCAATGAGAAGTTGCAGCAGCTGTTCAATCACACCATGTTCATCCTGGAGCAGGAAGAGTACCAACGAGAGGGCATCGAGTGGAACTTCATCGACTTTGGCCTGGACCTACAGCCTTGTATTGAACTGATTGAGCGGCCG
Seq C2 exon
AACAACCCTCCTGGTGTGCTGGCCCTGCTGGATGAAGAATGCTGGTTCCCCAAAGCTACGGACAAGTCTTTTGTGGAGAAGCTGTGCTCAGAGCAGGGCAATCACCCCAAATTTCAGAAGCCCAAGCAGCTAAAGGACAAAACAGAGTTCTCCATCATCCACTATGCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-'23-25,'23-23,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(10.0=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGCGCCTTTTCCGATGG
R:
GTCCTTTAGCTGCTTGGGCTT
Band lengths:
255-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]