MmuEX6060965 @ mm10
Exon Skipping
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14231128-14233692:-
Coord C1 exon
chr16:14233540-14233692
Coord A exon
chr16:14232525-14232698
Coord C2 exon
chr16:14231128-14231193
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCTCCATGCATATGTGCAGGTA
3' ss Score
5.59
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCTGACTTTGCCATCGAGGCCTTAGCCAAGGCCACCTATGAGCGCCTTTTCCGATGGATTCTCAGCCGTGTAAACAAGGCCTTGGACAAGACCCATCGGCAGGGGGCCTCCTTCCTGGGCATTCTGGATATTGCTGGGTTTGAAATCTTTGAG
Seq A exon
GTAAACTCCTTCGAGCAGCTGTGCATCAACTACACCAACGAGAAGCTGCAGCAGCTGTTCAACCACACGATGTTCATCCTGGAGCAGGAAGAGTACCAGCGAGAGGGCATCGAGTGGAACTTCATCGACTTCGGCCTGGACCTGCAGCCTTGTATTGAGCTGATTGAGCGGCCG
Seq C2 exon
AGAAACCCTGTCTCAAAAAACCAAAACGAAAAAAAGGAAGAAAAAAGCAGTAGAAGTGCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-'25-22,'25-21,26-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(8.3=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACTTTGCCATCGAGG
R:
CTTCCTGGCACTTCTACTGCT
Band lengths:
219-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types