GgaEX6012669 @ galGal4
Exon Skipping
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7578563-7579697:-
Coord C1 exon
chr14:7579545-7579697
Coord A exon
chr14:7578929-7579102
Coord C2 exon
chr14:7578563-7578736
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGTCCTCTTCACAGATC
3' ss Score
11.45
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCTGACTTTGCCATAGAGGCTTTGGCCAAAGCAAAATTTGAACGTCTCTTCCGTTGGATTCTAACTCGTGTAAACAAAGCTCTTGATAAAACCAAACGACAAGGCGCTTCTTTCTTGGGGATCCTTGATATTGCTGGATTTGAGATTTTTGAG
Seq A exon
ATCAATTCCTTTGAGCAGCTGTGCATCAATTACACTAATGAGAAACTTCAACAGCTTTTCAACCACACAATGTTTATATTGGAGCAAGAGGAATATCAGCGTGAGGGCATTGAATGGAATTTCATTGACTTTGGCCTTGACCTGCAGCCTTGCATTGAGCTAATTGAAAGACCC
Seq C2 exon
ACCAACCCCCCGGGTGTCCTAGCTCTGCTGGATGAAGAGTGCTGGTTTCCCAAAGCTACTGACACTTCCTTTGTGGAAAAACTAATTCAAGAACAAGGCAACCATGCCAAATTCCAGAAGTCCAAACAACTCAAGGATAAAACTGAGTTCTGCATACTGCACTATGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-'21-16,'21-15,22-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.1=100)
A:
PF0006316=Myosin_head=FE(9.3=100)
C2:
PF0006316=Myosin_head=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAAGCAAAATTTGAACGT
R:
GGACTTCTGGAATTTGGCATGG
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]