DreEX6019515 @ danRer10
Exon Skipping
Gene
ENSDARG00000030560 | helz
Description
helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
Coordinates
chr3:60745728-60750967:+
Coord C1 exon
chr3:60745728-60745995
Coord A exon
chr3:60749808-60750147
Coord C2 exon
chr3:60750837-60750967
Length
340 bp
Sequences
Splice sites
3' ss Seq
TTCGTGTGTTTCCCTCACAGGTT
3' ss Score
11.49
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACCTGGAGCACCTGTTGCAGGCGCGGCAGCAGCTCCTGATGACGGCCAAGCGCTGGGACTCGTCCTGCAAAACTATCGTGGAGTTCGTCCCGAATGAGAACATGGACCTGGAGCGCAGCTTGCTGACCCGCTACCAGATCCCGCTGTCCGCCGACCAGCTCTTCACGCAGTCCGTCCTGGACAAAACCCTCACCAGAGACAACTACCAGCCGCGGCTGCACGACCTGCTCTACATCGAGGAGATCGCGCAGTACAAGGAAGTCAGCAA
Seq A exon
GTTCAACATTAAGGTTAACCTGCAGCTGGTGACGAGCTTCATGCTGACGGGCATTTCAGGCGGTGCCAAATACGCTCAGAACGGACAACTGTTTGCACGCTTCAAGCTGACGGAGACTCTGTCTGAAGACACGCTGGCCGGCAGACTGGTCATGACGAAGGTCAACTCTGTGCTCCTGCTGCCCGTTTTTAAAGAGCGCATGGGCCAGAACCAGCCGGCGGGAGCCAAGGAGCGCGTTTACGAGGCGTTAATTGAGGAGAAAACGAAGGATTACATCTTCCTGCGGGTCTGTAAGGAGTGCTGTGATGAGCTGGGGCTGGTGGCCGATCAGGAGCTGCAG
Seq C2 exon
GTGGAGCTGCAGTTTCAGCTGAACAGGCTCCCTCTGTGTGAGATGCACTACGCTCTGGACCGCGTCAGAGATAACAGTATCCTGTTTCCAGACATCAGCCTCACTCCCACAATCCCCTGGAGTCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030560-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGATGACGGCCAAGC
R:
GGAGTGAGGCTGATGTCTGGA
Band lengths:
343-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]