RnoEX0041513 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95834183-95847462:+
Coord C1 exon
chr10:95834183-95834450
Coord A exon
chr10:95841063-95841396
Coord C2 exon
chr10:95847283-95847462
Length
334 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTGCTTTCGATTTAGGTT
3' ss Score
11.39
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCTTGAGTACCTGATGCATGCCAAGCAGCAGCTGGTAACCACAGCCAGGCGCTGGGAGCCTTCCTCCAAGACTATTGTAGACTTTGAACCTAACGAGACTACTGATTGGGAGAAGAGCCTTTTGATCAGATACCAAATTCCTCTCTCTGCTGACCAGCTGTTTACACAGTCCGTTTTAGACAAATCCTTGACCAAGACTAACTATCAGTCACGGCTACACGACCTGCTTTATATTGAGGAGATAGCCCAGTATAAAGAAGTCAGCAG
Seq A exon
GTTCAACCTTAAGGTGCAGCTGCAGATCTTAGCAAGCTTCATGCTCACTGGAGTTTCTGGGGGTGCAAAGTATGCTCAGAATGGACAACTTTTTGGTCGTTTTAAACTTACTGAAACCCTGTCTGAAGACACTTTGGCTGGACGACTGGTGATGACCAGGGTCAATGCTGTTTATTTATTACCAGTCCCTAAAGAGAAGCTCGTCCAGTCCCAGGGAACCAAAGAGAAGGTTTATGAAGCTACTATTGAAGAAAAAACAAAAGACTATGTATTTTTAAGGATATCCAGGGAATGCTGTGAAGAGCTCAGTCTGCGGCCTGACTGTGACACCCAG
Seq C2 exon
ACAGTGGGATGAGCAGTTGGATCCTCGACTAAATGCAAAGCAGAAAGAAGCTGTGCTGGCCATCACCACTCCGCTCTGCATCCAGCTGCCCCCCGTTCTTATCATTGGACCCTACGGGACGGGTAAAACCTTCACTCTGGCTCAGGCCGTCAAGCACATACTGCAGCAGCAGGAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213_MULTIEX3-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(26.3=83.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGATGCATGCCAAGCAG
R:
GATGCAGAGCGGAGTGGTGAT
Band lengths:
342-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]