GgaEX6016293 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7188390-7195095:+
Coord C1 exon
chr18:7188390-7188657
Coord A exon
chr18:7191419-7191752
Coord C2 exon
chr18:7194965-7195095
Length
334 bp
Sequences
Splice sites
3' ss Seq
CTGGATGCTTTCTTGCTTAGGTT
3' ss Score
7.83
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATCTTGAATACCTGATGCATGCACGGCAACAGCTACTAACTACAGCTAAGCGTTGGGATTCTACTTCTAAGACTATTGTAGAATTTGAACCTAATGAAACTACTGAATTGGAGAAGAGCCTTCTTACCAGATACCAAATCCCTCTATCTGCTGACCAGTTATTTACACAATCTGTCCTGGACAAATCATTGACCAAGACCAACTATCAGTCACGGTTGCATGACCTCCTTTATATTGAGGAAATAGCACAGTATAAGGAAGTTAGCAA
Seq A exon
GTTCAACATAAAAGTGCAATTGCAGATTGTAGCAAGCTTCATGCTCACTGGGGTTTCTGGAGGTGCAAAGTATGCCCAAAATGGACAACTTTTTGGACGCTTTAAGCTCACTGAAACGCTTTCAGAAGACACTTTGGCTGGACGGCTGGTGATGACCAAAGTCAACGCTGTTTATTTATTGCCTGTCACTAAAGAGAAGTCAGCACAGACCCAAGGAACCAAAGAGAAGGTTTATGAAGCAGCTATTGAAGAGAAAACAAAGGATTACATCTTCTTGAGGGTATCCAGGGAATGCTGTGAAGAGCTTAATCTTCGGGCAGATTGTGAGATGCAG
Seq C2 exon
GTTGAACTTCAGTTTCAGCTGAATCGCTTACCCCTCTGTGAAATGCATTATGCCTTGGACAGGATTAAGGACAACAGTATTTTGTTTCCAGATGTCAGCATGACTCCCACCATACCCTGGAGTCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.009 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTAAGCGTTGGGATTCT
R:
CCAGGGTATGGTGGGAGTCAT
Band lengths:
347-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]