MmuEX6090688 @ mm10
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107613851-107620214:+
Coord C1 exon
chr11:107613851-107614118
Coord A exon
chr11:107618983-107619316
Coord C2 exon
chr11:107620084-107620214
Length
334 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGCTTTTGATTTAGGTT
3' ss Score
11.24
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCTTGAATACCTGATGCATGCAAAGCGGCAGCTGGTAACCACAGCCAAGCGCTGGGACTCTTCTTCTAAGACTATTGTAGATTTTGAACCTAATGAAACTACTGATTTGGAGAAGAGCCTTTTGATCAGATACCAAATTCCTCTGTCTGCTGACCAGCTGTTTACACAGTCCGTCTTAGACAAATCATTGACCAAGACTAACTATCAGGCACGGCTGCACGACCTGCTTTATATTGAGGAGATAGCCCAGTATAAAGAAGTCAGCAG
Seq A exon
GTTCAACCTTAAAGTGCAATTGCAGATTTTAGCAAGCTTCATGCTCACTGGAGTTTCTGGGGGTGCAAAGTATGCTCAGAATGGACAACTTTTTGGTCGTTTCAAGCTTACTGAAACCCTCTCGGAAGACACTTTGGCTGGACGGCTGGTGATGACCAGGGTCAATGCTGTTTATTTATTACCAGTCCCTAAAGAGAAGCTCGTTCAGTCCCAGGGAACCAAAGAGAAGGTTTATGAAGCTACTATTGAAGAAAAAACAAAAGACTATGTATTTTTAAGGATATCCAGGGAATGCTGTGAAGAGCTTAGTCTGCGGCCTGACTGTGACATCCAG
Seq C2 exon
GTTGAGCTTCAGTTTCAGTTGAACCGATTACCCCTCTGTGAAATGCATTATGCACTAGACAGGATTAAGGACAATGCTGTTTTGTTTCCAGACATCAGTATGACTCCTACCATACCTTGGAGTCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721-'24-20,'24-19,26-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGATGCATGCAAAGCGG
R:
TGGAAACAAAACAGCATTGTCCT
Band lengths:
350-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types