DreEX6019671 @ danRer10
Exon Skipping
Gene
ENSDARG00000102260 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr6:214932-216653:-
Coord C1 exon
chr6:216612-216653
Coord A exon
chr6:215987-216191
Coord C2 exon
chr6:214932-215067
Length
205 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGACT
3' ss Score
8.05
5' ss Seq
CTCGTGAGC
5' ss Score
3.76
Exon sequences
Seq C1 exon
AAACCGACAGCAAAGTTCTAGATCTGTTTCAGGCCACGTTTG
Seq A exon
ACTGCTACCGCTACACATCAGTGGTGTCGGTGGATGTGGTTCTGCTGGAGGGCCCGAACCAGCAGCACTCCTCCTGTCTGTGGCACCTGAGGGCCCCATCCGGCAGGCGTCTGGAGCTGCAGGTGCAGTGGCTGCGGAGCGAGTGCAGAGACCGGCTGATCATCTACGACTCCATCACACCCACAGACACACACCTCATCACCTC
Seq C2 exon
GCTGTACGGCTGCAGTCGGTATGAGCAGTCGGTGCAGCTGCTGTCGTCTGCTGACTGGATGACGGTGGTCTGGAAGCAGGGGCTCTACAGCTACAAGGACCCGTTTGCTCTGAGCGCACGGGCATGGCCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102260-'8-9,'8-8,9-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(59.4=82.6)
C2:
PF0043115=CUB=PD(39.6=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAGCAAAGTTCTAGATCTGT
R:
ATGCCCGTGCGCTCAGAG
Band lengths:
164-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]