GgaEX6002151 @ galGal4
Exon Skipping
Gene
ENSGALG00000012483 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr1:51323352-51324840:+
Coord C1 exon
chr1:51323352-51323393
Coord A exon
chr1:51324127-51324331
Coord C2 exon
chr1:51324704-51324840
Length
205 bp
Sequences
Splice sites
3' ss Seq
TATCTTTCCTCCGCATTCAGGTT
3' ss Score
10.18
5' ss Seq
CTCGTAGGT
5' ss Score
4.63
Exon sequences
Seq C1 exon
AATCCACTGTGAAAGACATAGTAGTGCTGAAATCCACTCTGG
Seq A exon
GTTGCTACAGATACAGCTATGTCCAGGAGGATGACATCCTAAGACTGGAGGGTCCTGACTACCTGGCCTCCAGTTGTCTTTGGCACCTCCACAGCCTCAAGGGCTACATGATCAAGCTACGCTTAGAGTGGACTCTGCCGGACTGCAGGGACCGCCTGGCTATGTATGATGCAGCTGGTCCCCTGGAGAAACACCTCATCACCTC
Seq C2 exon
GATCTATGGCTGCAGCCGGCAGGAGCCTGTTGTGGAAGTCCTCTCATCAGGCCCTGTCATGTCCATTGTGTGGAAGAAAGCCCTGTACAGCTACTATGACCCCTTCGTCCTCTCAGCACAGGTGGTGCCCCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012483-'4-6,'4-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGTGAAAGACATAGTAGTGC
R:
CACCTGTGCTGAGAGGACGAA
Band lengths:
164-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]