RnoEX6032977 @ rn6
Exon Skipping
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119673219-119678912:-
Coord C1 exon
chr7:119678871-119678912
Coord A exon
chr7:119673960-119674164
Coord C2 exon
chr7:119673219-119673355
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTTTCCACCTGCAGGCT
3' ss Score
12.11
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAGCCAGCGTGAACGACATAGTCGTACTGAATTCCACGCTGG
Seq A exon
GCTGTTACCGCTACAGCTACGTGAACCCGGGCCAGGTCCTCCGGTTGAGGGGGCCCGACCAGCAGACCACTAGCTGCCTGTGGCACCTGCAGGGGCCCGAGGACCTCATGCTCAAAGTGCAGCTAGAGTGGACTCGGGTTGATTGCAGAGACAGGGTGGCGATGTACGACGCAGCTGGGCCCCTGGAGAAGAGACTTATCACCTC
Seq C2 exon
GGTCTATGGGTGCAGCCGCCAGGAACCCGTGATGGAGGTGCTGGCGTCGGGCTCTGTCATGGCCGTGGTGTGGAAGAAGGGCTTGCATAGCTTCTATGACCCTTTTCTGCTCTCAGTGAAGTCTGTGGCCTTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184-'5-10,'5-9,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAGCGTGAACGACATAG
R:
GGAAGGCCACAGACTTCACTG
Band lengths:
176-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]