MmuEX6054751 @ mm10
Exon Skipping
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78454145-78459471:-
Coord C1 exon
chr15:78459430-78459471
Coord A exon
chr15:78454914-78455118
Coord C2 exon
chr15:78454145-78454281
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTTCTACCTCCAGGCT
3' ss Score
10.97
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAGCCAGTGTGAACGACATAGTCGTACTGAATTCCACGCTGG
Seq A exon
GCTGTTATCGCTACAGCTATGTGAACCCAGGCCAGGTCCTCCCATTGAAGGGGCCTGACCAGCAGACCACAAGCTGCCTGTGGCATCTGCAAGGGCCCGAAGACCTCATGATCAAAGTGCGGCTGGAGTGGACCCGGGTCGATTGCAGAGACAGGGTGGCGATGTACGACGCAGCTGGGCCCCTGGAGAAGAGACTTATCACCTC
Seq C2 exon
GGTCTATGGGTGCAGCCGCCAGGAACCTGTGATGGAGGTGCTGGCATCGGGCTCCGTCATGGCCGTGGTGTGGAAAAAGGGCATGCATAGCTACTATGACCCTTTCCTGCTCTCAGTGAAGTCTGTGGCCTTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942-'8-10,'8-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGTGTGAACGACATAGT
R:
GGAAGGCCACAGACTTCACTG
Band lengths:
175-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types