DreEX6020346 @ danRer10
Exon Skipping
Gene
ENSDARG00000089933 | rasal3
Description
RAS protein activator like 3 [Source:ZFIN;Acc:ZDB-GENE-101130-3]
Coordinates
chr6:8235059-8235933:-
Coord C1 exon
chr6:8235743-8235933
Coord A exon
chr6:8235562-8235646
Coord C2 exon
chr6:8235059-8235457
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTCCTTACTTGTTTGTGTAGACT
3' ss Score
6.61
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CATGCGCAAGAGTTGTCTGAGCTGCGTATGGGAGTGGAGCAGGTGACGGAACGTGAGCTGGAGATGGCCAAGCGCTTAGAAGACTTCATCGTTTTAACTCAAGACCAGAATGCACAGCTACAGGCAGAGGTTCAGGATCTTCGTAATCTCTTGGCCATCCGTGAAGAACAACTAGCAAGTGCAACTTTCAG
Seq A exon
ACTTGGAGTCATAGAAGAGGAGCGGGAGGAAGATGAGAGGAAGCTGAACGTTGCAGTGGCTGCAGTAGAGCGCATGAATGTTTTG
Seq C2 exon
GAGGAGCAGTTTGCTGGGTTGTTGAAAGATGTGCACCACCTCTATGCGGCTAATTCCGATGGCCTAAGACAGACTTACATCAATACCTGATGCAAGACAGGAAATACTCTGGTGTGGTGCGCTACAGAGTGCCATTGCGTAATGTCATTAGCTTTTGTCAGATTTTATGAGTTCACTGAGCTTGCATGGCTACCTGTCACAGTAAAACAGATACATTTTTACACAATTAAAACTCATTTGTCTATATTTCCGAGTTTAATATAAAGAATAGAGCTGCATAAGAGTTCTTCGACTGTGTTTTGCGGATTTTAGCAAATAAATTGTGCATAAAACAAATTTTGGATCACCGTTATTATTTTAACTTTGATACTTTAGTCACTGCAATGACTCAATGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089933-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATCCGTGAAGAACAACT
R:
TACGCAATGGCACTCTGTAGC
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]