MmuEX0038905 @ mm10
Exon Skipping
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32390659-32392203:-
Coord C1 exon
chr17:32392046-32392203
Coord A exon
chr17:32391336-32391399
Coord C2 exon
chr17:32390659-32391235
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCCTGACCCCCACAGTAT
3' ss Score
6.83
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTAGCAGAGATACAATGTGAGGTGGCTATATTCCGCGAGGCACAGAAAGCTCTGTCCCTTCTGGTGGAGTCGTTGAGTACCCAAGTCCAAGCCTTGAAGGAGCAGCAGGAGCACTTCCGCTGTCAGCTGCAGGATCTGTACTCCAGACTGGGAGCTGG
Seq A exon
TATCTCAAAGTTGGATTCTAAGGGTGGTCTCCCAAGCAACGGAAGCCACAGGCTGAAAAGTCTG
Seq C2 exon
GAACAGCGCCTGACTGAGATGGAATGTTCTCAGGACCAGCTGAGGGATAGCCTCCAAAGCCTGCAACTTCTTTCAAAAACACCAGGATCTCGGAGCCAGCCCCTGCCTCTCAAAGCACCATGTGTCAATGGAGCTGATCTGTCAATGGGCACTTGAGCATTTCACCCCACTCCATATATGGTCTGGAAGCCAAGAGAGCCACTACAGAGGATTTTCTGACTGCCTCAGCCCTTCATGGCCTTCAGTGGGGGACAGAGTGGGAGGTGTCAATCACTCTGGTAACTGTGAGGTTGCCCAGTAAATCCATTTCAGAAAATCACCGGTTTCTCTGCCCCTACAAATGATTAATACAAGAGAATGCCCAGTTCTCCATTCAGGTCTCCCAAATTCATACCTAATTTGAAGTCTCCTGAAGTTGGAAATAATGAGCAGATCCTCACAATTGGTGTGATCTAAGGTTGTCACTTTAAGAGACTCCATTCTCTCCTCTGTAAAGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.773 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGCCTTGAAGGAGCAG
R:
AGAAGTTGCAGGCTTTGGAGG
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types