RnoEX0074227 @ rn6
Exon Skipping
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14403592-14405561:-
Coord C1 exon
chr7:14405404-14405561
Coord A exon
chr7:14404714-14404777
Coord C2 exon
chr7:14403592-14404613
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCTGACCCCTCACAGGAT
3' ss Score
8.19
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTAGCAGAGATACAATGCGAGGTAGCTGCACTCCGCGAGGAACAGAAAGCCCTGTCCCATCTGGTGGAGTCGCTGAGTACCCACATCCAGGCCTTGACGGAGCAGCAAGAGCAGCTCCGCTGTCAGCTGCAGGATCTGGACTCCAGACTGGGAGCTGG
Seq A exon
GATCTCAAAGTTGGATTCTAAGGGTGGTCTCCCAAGCAACGGTAGCCTCGGGCTGAAAAGTCTG
Seq C2 exon
GAGCACCGCATGACTGAGATGGAATGTTCTCAGAACCAGCTGAGGGATACCCTCCAAAGCCTACAGCTTCTTTCAAAAACTCCAGGATCTCGGAGCCAGCCCCCGCCTCTCAAAGCACCATGTGTCAATGGAGCTGATCTGTCGATGGGCACCTGAGTATTTCACCCCACTCCATACAGTCTGGAAGCCAGGAGAGCCACTACAGAGGATTTTCTGACTACCTCAGTCCTTCATGGCCCTTAGTAGGGGACAGAGTGGGAGGTGTCAATCACTCTGGTAACTGTGAGGTTGCCCAGTAAATCTCCATTTCAGAAAATCACTGGTTTCTCTGCCCCTACAAAGATTAATGCAAGAGCATACCCAGTTCTCTACTCAGCTCCCCCAAATTCTTACCTAATTTGAAGTCTCCCGAAGATGAAAATGATTAGCAAAATTGTCCTCACTATTGGTGTGATCTAAGGTCATCACTCTAAAAGACTCCATTCTCTCTTCTGTATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167-'22-19,'22-18,23-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=0.955 C2=0.843
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=FE(49.1=100)
A:
PF045827=Reo_sigmaC=FE(19.8=100)
C2:
PF045827=Reo_sigmaC=PD(23.6=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAACAGAAAGCCCTGTC
R:
CATCTCAGTCATGCGGTGCTC
Band lengths:
144-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]