DreEX6020707 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10353929-10358427:-
Coord C1 exon
chr6:10358308-10358427
Coord A exon
chr6:10357961-10358203
Coord C2 exon
chr6:10353929-10354111
Length
243 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTTGCATTTACAGTTT
3' ss Score
9.83
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTGCCGTGGGAAGACCTTCGCTACTTGTTTGGTGAGATCATGTATGGAGGCCACATTACCGATGACTGGGACAGGAGACTGTGCAGAACTTACCTGGAAGAGTACATGCAGCCTAACCAG
Seq A exon
TTTGACAGGAAGATGTCATTGGCCCCGGGATTTATTGTACCTTCTAACCTGGATTACCAGGGTTACCACGCATACATAGATGAGATGCTGCCCCACGAAAGCCCAGTGCATTACGGTCTGCATCCAAACGCAGAGATCGAGTTTCTCACAGTGATGTCCGACAGCCTCTTCCACACTCTTCTAGAGCTTCAGTCCAGAGACTCCAGCATGGGGGAAGGAGCTTCGCAGACCACTGAAGAGAAG
Seq C2 exon
GTGAAGACGATCCTGGATGACATCCTGGAGAAACTGCCGGAAGAGTACAACATGTCTGACATCACGTCTAAAACAGCAGAGCGCTCGCCCTTCATTCTGGTGTGTTTCCAGGAGTGTGAGCGCATGAACATGCTGATCAATGAAATAAGACGCTCACTCAAAGAGCTGGATCTCGGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'73-77,'73-75,75-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
PF0302810=Dynein_heavy=FE(11.4=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGACCTTCGCTACTTGT
R:
GAGCCCGAGATCCAGCTCTTT
Band lengths:
293-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]