GgaEX6016558 @ galGal3
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9766693-9768485:+
Coord C1 exon
chr18:9766693-9766872
Coord A exon
chr18:9767226-9767408
Coord C2 exon
chr18:9768303-9768485
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCCACCCCTGCCCAGGGC
3' ss Score
7.29
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGCCGTGGGATGACCTCCGGTACCTCTTCGGTGAAATCATGTATGGAGGGCACATCACAGACGACTGGGACCGGCGGCTGTGCCGCACCTACCTGAGCGAATACATCCACGTGGAGATGCTGGACGGGGAGCTGCACCTGGCCCCGGGCTTCCTCATCCCACCCAGCCTGGATTACAAG
Seq A exon
GGCTACCACGAGTACATTGATGACAACTTGCCACCAGAGAGCCCCTACCTGTACGGCCTCCATCCCAACGCCGAGATTGGCTTCCTGACCGTCACCTCCGAGAGGCTCTTTCGGACAGTTTTAGAAATGCAGCCCAAGGAATCTGATGCTGTGGGTGGCTCAGGTGCCTCCCGCGAGGAAAAG
Seq C2 exon
GTGAAGTCAGTCCTGGACGAGATCATCGAGAAGCTGCCGGAGCCGTTCAACATGGCAGAGATCATGGCTAAAGCAGAGAATAAGACACCATACGTGGTGGTTGCCTTCCAGGAATGTGAAAGAATGAACATTCTGACCCATGAAATCAGGCGCTCTTTGAAAGAATTAGATCTGGGGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.4=100)
A:
PF0302810=Dynein_heavy=FE(8.5=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCTACCTGAGCGAATAC
R:
AAGAGCGCCTGATTTCATGGG
Band lengths:
253-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]