BtaEX6090354 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54401461-54402988:+
Coord C1 exon
chr19:54401461-54401640
Coord A exon
chr19:54401999-54402181
Coord C2 exon
chr19:54402806-54402988
Length
183 bp
Sequences
Splice sites
3' ss Seq
CACCTAGCCCCCTTTTGCAGGGC
3' ss Score
6.83
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTGCCCTGGGACGACCTCCGCTACCTCTTCGGGGAGATCATGTACGGCGGCCACATCACGGACGACTGGGACCGCCGGCTCTGCAGGACCTACCTGGCGGAGTACATCCGGGCGGAGATGCTGGAGGGGGAGATCCTGCTGGCCCCGGGCTTTCAGATCCCCCCCAACCTGGACTACAAG
Seq A exon
GGCTACCACGAATACATCGATGAGAACCTGCCCCCCGAGAGTCCCTACCTGTACGGCCTGCACCCCAATGCGGAGATCGGCTTCCTGACGGTCACCTCGGAGAAGCTGTTCCGCACCGTCCTGGAGATGCAGCCCAAGGAGACAGACTCGGGGGCTGGCACTGGGGTCTCCCGCGAGGAGAAG
Seq C2 exon
GTGAAGGCCGTGCTGGACGAGATCCTAGAGAAGATCCCGGAGACGTTCAACATGGCCGAGATCATGGCCAAGGCCGCTGAGAAGACCCCCTACGTGGTGGTCGCCTTCCAGGAATGTGAGAGGATGAACATCCTGACCAATGAAATGCGGCGCTCGCTGAAGGAGCTGAACCTGGGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'80-85,'80-84,81-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.164 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.4=100)
A:
PF0302810=Dynein_heavy=FE(8.5=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACCTGGCGGAGTACATC
R:
GCCGCATTTCATTGGTCAGGA
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]