MmuEX6091651 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117886832-117888817:-
Coord C1 exon
chr11:117888638-117888817
Coord A exon
chr11:117887987-117888169
Coord C2 exon
chr11:117886832-117887014
Length
183 bp
Sequences
Splice sites
3' ss Seq
CATAAGCCGCCCTTTCCCAGGGC
3' ss Score
4.89
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGCCCTGGGATGACCTCCGCTACCTCTTTGGTGAGATCATGTATGGAGGCCACATCACTGATGACTGGGACCGCCGGCTGTGCAGGACCTACCTGGCAGAGTACATCCGCGTGGAGATGCTGGAAGGGGAGGTGCTGCTGGCCCCCGGGTTTCAGATCCCCCCAAACCTGGACTATAAG
Seq A exon
GGCTACCACGAATACATCGATGAGAACCTGCCCCCCGAGAGTCCTTACCTGTACGGCCTGCACCCCAACGCAGAGATCGGCTTCCTGACTGTCACCTCAGAGAAGCTGTTCCGAACCGTCCTAGAAATGCAGCCCAAAGAGACAGACTCGGGAGCAGGCACGGGGGTGTCACGGGAGGAAAAG
Seq C2 exon
GTGAAGGCTGTGCTGGATGACATCCTGGAGAAGATCCCAGAGACCTTCAACATGGCTGAGATCATGGCCAAGGCTGCTGAGAAGACCCCCTATGTGGTGGTCGCCTTTCAAGAATGTGAGAGGATGAACATCCTCACCAATGAGATGCGGCGCTCACTGAAGGAGCTGAACCTGGGACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'85-88,'85-84,86-88=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
PF0302810=Dynein_heavy=FE(8.4=100)
C2:
PF0302810=Dynein_heavy=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACATCACTGATGACTGGG
R:
TTCTTGAAAGGCGACCACCAC
Band lengths:
245-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: