RnoEX6050820 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107031644-107033466:-
Coord C1 exon
chr10:107033287-107033466
Coord A exon
chr10:107032628-107032810
Coord C2 exon
chr10:107031644-107031826
Length
183 bp
Sequences
Splice sites
3' ss Seq
TATAAGCCACCCTTTCCCAGGGT
3' ss Score
4.96
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGCCCTGGGATGATCTCCGCTACCTTTTTGGTGAGATCATGTACGGAGGCCACATCACTGATGACTGGGACCGCCGGCTGTGCAGGACCTACCTGATAGAGTTCATCCGTGTGGAGATGCTAGAAGGGGAGGTGCTGCTGGCCCCCGGGTTTCAGATCCCCCCAAATCTGGACTATAAG
Seq A exon
GGTTACCATGAGTACATCGATGAGAACCTACCCCCCGAGAGTCCTTACCTGTACGGCCTGCACCCCAACGCAGAGATCGGTTTCCTGACAGTCACCTCGGAGAAGCTGTTCCGAACTGTCCTAGAGATGCAGCCCAAAGAGACAGACTCAGGAGCTGGCACGGGGGTGTCACGGGAGGAAAAG
Seq C2 exon
GTGAAGGCTGTGCTGGATGACATCCTCGAGAAGATACCAGAGACGTTCAACATGGCTGAGATCATGGCCAAAGCTGCCGAGAAGACACCCTACGTGGTCGTTGCCTTTCAAGAGTGTGAGAGGATGAACATCCTCACCAATGAGATGCGGCGCTCGCTGAAGGAGCTGAACCTGGGACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'87-97,'87-92,88-97=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.0=100)
A:
PF0302810=Dynein_heavy=FE(8.1=100)
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATGATCTCCGCTACCT
R:
AGCTTTGGCCATGATCTCAGC
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]