BtaEX6026587 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30775960-30788679:+
Coord C1 exon
chr4:30775960-30776079
Coord A exon
chr4:30784067-30784309
Coord C2 exon
chr4:30788497-30788679
Length
243 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTCTGGGCTTGAAGATT
3' ss Score
5.58
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GTCCCGTGGGAAGACCTCCGCTACCTCTTTGGTGAGATCATGTATGGGGGCCACATCACAGATGACTGGGACCGCAAACTGTGCTGTACGTATTTAGAAGAATTCATGAATCCCTCTCTG
Seq A exon
ATTGATGATGAGCTGATGCTGGCACCAGGATTTGCAGCCCCACCCAGCCTGGACTGCTCAGGCTACCACCAGTACATAGAAGAGACGCTTCCTCCAGAGAGCCCAGTGCTGTATGGCCTCCACCCGAACGCTGAAATCGAATTTCTGACGGTCACATCCAACATGCTGTTCAGAACCTTGCTGGAGATGCAGCCCAGGAATGCAGTGAGCAGCGAGGAGCTGGGACAGTCCACAGAAGACAAG
Seq C2 exon
GTTAAGCATGTCTTGGATGATATTTTGGAGAAACTTCCAGAAGAGTTCAACATGACAGAGATAATGCAAAAAAAAACAAACAGAAGCCCCTATGCCCTTGTTTGCTTCCAAGAATGTGAGAGGATGAACATTCTCCTTCGGGAAATCCGTGTGTCACTTCAACAACTGGAACTTGGATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'93-101,'93-100,94-101=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.099 C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
PF0302810=Dynein_heavy=FE(11.4=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACCTCCGCTACCTCTT
R:
TCAATCCAAGTTCCAGTTGTTGA
Band lengths:
293-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]