DreEX0003647 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19382698-19392082:-
Coord C1 exon
chr16:19391963-19392082
Coord A exon
chr16:19385260-19385502
Coord C2 exon
chr16:19382698-19382880
Length
243 bp
Sequences
Splice sites
3' ss Seq
AATGTAACCTGTCTGTTCAGTTT
3' ss Score
5.9
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTACCATGGGAGGATCTTTGTTATCTGTTTGGAGAGATCATATATGGAGGACACATCACTGATGAGAGAGACAGGATGCTCTGCCGCACGTACCTTCAGGAGTTCATCAATCCCAAGATG
Seq A exon
TTTGAAGGGGAGCTGTTTTTGTGTCCTGGCTTTCCTGCTCCTCCAGATCTGGACTACAGTGAGTATCACAGGTATGTGGATGAAAGGTTGCCCTCGGAAAGCCCCGCTCTCTTCAGACTGCACCCGAATGCTGAGATTGAGTTCATGACGGCCACGTCTGAGAGCCTCTTCAAAACCTTACTGGAGCTGCAGCCTAGAGACTCCACAACAGCAGAGGGAGCAACACAGTACACAGAGGAGAAG
Seq C2 exon
GTGAGGAGTGTTGTGGATGAGCTCCTGGAGAAGTTGCCTGAGGAGTATAATGTGGCAGAGCTGATGTCTAAAACAGCTCAGAGGAGCCCGTATGTCCTGGTTTGTCTGCAAGAGTGTGAACGCATGAATCTACTGCTGGAACACATACACACTTCATTAAAAGAGCTCCATCTGGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'53-59,'53-58,54-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
PF0302810=Dynein_heavy=FE(11.4=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCATGGGAGGATCTTTGT
R:
TGAGTGCCAGATGGAGCTCTT
Band lengths:
301-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]