RnoEX6030100 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145790231-145802246:-
Coord C1 exon
chr6:145802127-145802246
Coord A exon
chr6:145793217-145793459
Coord C2 exon
chr6:145790231-145790413
Length
243 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTATGGTTAAAGATT
3' ss Score
4.06
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTCCCGTGGGAAGACCTCCGTTACCTCTTTGGAGAGATCATATATGGGGGCCATATCACAGATGCCTGGGATCGCAAACTATGCCGGGTGTATCTAGAAGAATTCATGAATCCATCTCTG
Seq A exon
ATTGAGGATGAACTCATGCTGGCACCAGGATTTGCAGCCCCTCCCTACTCTGATTATTCTGGCTACCACCAGTACATAGAAGACATGTTGCCTCCAGAAAGCCCGGCACTGTATGGCCTCCACCCCAATGCTGAAATAGAGTTACTAACAGTGACGTCCAACATGCTCTTCAGAACTCTGCTGGAGATGCAACCCAGGAATGCAGTCAGCAACGAGGAACAGGGGCAGTCCACAGAAGACAAG
Seq C2 exon
GTTAAGAATATCTTGGACGACATTTTGGAGAGACTTCCAGAAGAGTTCAACATGGCGGAGATAATGCAAAAGAACCCAAATAGAAGCCCGTATATTCTCGTTTGCTTTCAAGAGTGTGAGAGGATGAACGTTCTCCTCCGGGAAATCCGTGTGTCGCTTCAACACTTAGACCTTGGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'101-103,'101-101,102-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=0.033
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
PF0302810=Dynein_heavy=FE(11.4=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAAGACCTCCGTTACCT
R:
ACCAAGGTCTAAGTGTTGAAGCG
Band lengths:
292-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]