GgaEX0001204 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1190703-1194185:+
Coord C1 exon
chr18:1190703-1190894
Coord A exon
chr18:1191656-1191826
Coord C2 exon
chr18:1194003-1194185
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCTTCCGTGTGCAGTAC
3' ss Score
9.93
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTCCCATATGATGATTTACGCTACCTCTTTGGTGAGATTATGTACGGAGGTCACATTACGGATGACTGGGACAGACGACTTTGCAAGACCTATTTGGAAGAATTTATTAAGCCAGAAATGCTGGAGGGAGAATTCTTCCTTGCTCCAGGATTCCCTCTCCCAGGGAACATGGACTATAATGGCTATCATCAG
Seq A exon
TACATAGATGACACCCTGCCACCGGAGTCTCCTTATCTCTATGGCCTCCACCCCAACGCTGAGATTGGATTCCTTACCCAGAGCTCGGAGAAGCTCTTCCGCGTCGTGCTGGAGATGCAGCCCCGCGACAGCAGCATGGGCGAAGGAGGAGTGGTGACCAGGGAAGAAACG
Seq C2 exon
GTGAAAGCTCTTCTGGATGAGATGCTGGAGAAGCTGACGGATGAGTTTAACATTGCAGAACTGATGGCAAAGGTGGAAGAGAGGACACCGTATGTTGTGGTTGCTTTCCAGGAATGTGAACGCATGAACAGCCTCACCAGTGAAATAAAGAGCTCTCTCAAGGAACTGGACCTGGGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'63-69,'63-68,64-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(12.4=100)
A:
PF0302810=Dynein_heavy=FE(11.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGACGACTTTGCAAG
R:
GCGTTCACATTCCTGGAAAGC
Band lengths:
249-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]