MmuEX6086240 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65654744-65663569:-
Coord C1 exon
chr11:65663378-65663569
Coord A exon
chr11:65661759-65661929
Coord C2 exon
chr11:65654744-65654926
Length
171 bp
Sequences
Splice sites
3' ss Seq
AATCTCGCCTTTGGTTTCAGTAT
3' ss Score
6.24
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTACCCTATGACGACTTGCGTTACCTGTTCGGTGAGATCATGTACGGTGGCCATATCACAGATGACTGGGACAGGAGACTCTGCAGAACCTATTTAGAGGAATTCATTCGGCCAGAGATGCTAGAAGGAGAGCTCTCCCTGGCCCCGGGGTTCCCACTCCCAGGAAACATGGACTACAGTGGCTATCACCAG
Seq A exon
TATATTGATGCTGAGCTGCCCCCTGAGTCTCCCTACCTATATGGCCTCCATCCAAACGCCGAGATTGGCTTCCTGACCCAGACATCGGAAAAACTCTTCCGAACCGTGCTGGAGATGCAGCCTCGGGACAGCCAGGCTGGAGATGGAGCTGGCATCACAAGGGAAGAAAAG
Seq C2 exon
GTCAAAACCTTTCTGGAAGAAATACTGGATCGGATGACAGATGAATTTAACATCGCGGAGCTAATGGCTAAGGTGGAGGAACGCACCCCCTACATTGTAGTTGCCCTCCAGGAGTGTGAACGCATGAACATCCTTACCAGAGAGATCCAGCGCTCACTAAGAGAGCTGCATCTTGGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'71-71,'71-70,72-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.139 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(14.2=100)
A:
PF0302810=Dynein_heavy=FE(12.6=100)
C2:
PF0302810=Dynein_heavy=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGGAGACTCTGCAGAA
R:
TTCATGCGTTCACACTCCTGG
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: