HsaEX6021114 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11933880-11942485:+
Coord C1 exon
chr17:11933880-11934071
Coord A exon
chr17:11937352-11937522
Coord C2 exon
chr17:11942303-11942485
Length
171 bp
Sequences
Splice sites
3' ss Seq
AGCTTGCCCTTGATTTTCAGTAC
3' ss Score
5.54
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTCCCCTATGATGATTTGCGCTACCTGTTTGGAGAGATCATGTATGGAGGCCATATCACAGATGACTGGGACAGAAGACTCTGCAGAACCTACCTGGGGGAATTCATTCGACCAGAAATGTTAGAAGGAGAACTGTCTTTGGCCCCAGGGTTCCCACTCCCAGGCAACATGGACTACAATGGTTATCATCAG
Seq A exon
TACATCGATGCTGAGCTGCCCCCAGAATCCCCCTACCTCTATGGCCTCCACCCGAACGCAGAGATTGGCTTCCTGACCCAAACCTCAGAAAAGCTCTTCCGCACTGTGCTGGAGCTGCAGCCTCGGGACAGCCAGGCCAGAGACGGAGCGGGCGCCACAAGAGAAGAAAAG
Seq C2 exon
GTCAAGGCACTTCTGGAAGAAATATTGGAGCGGGTGACAGACGAGTTTAACATCCCAGAACTGATGGCCAAAGTGGAGGAGCGCACCCCTTACATTGTAGTTGCCTTCCAGGAGTGTGGCCGGATGAATATCCTCACCAGAGAGATTCAGCGCTCACTGAGGGAGCTGGAGCTCGGCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'128-115,'128-112,130-115
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(16.2=100)
A:
PF0302810=Dynein_heavy=FE(12.4=100)
C2:
PF0302810=Dynein_heavy=FE(13.3=100)
Main Skipping Isoform:
ENST00000262442fB14009
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCAGAACCTACCTGGG
R:
TATTCATCCGGCCACACTCCT
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains