MmuEX6086240 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65841242-65850067:-
Coord C1 exon
chr11:65849876-65850067
Coord A exon
chr11:65848257-65848427
Coord C2 exon
chr11:65841242-65841424
Length
171 bp
Sequences
Splice sites
3' ss Seq
AATCTCGCCTTTGGTTTCAGTAT
3' ss Score
6.24
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTACCCTATGACGACTTGCGTTACCTGTTCGGTGAGATCATGTACGGTGGCCATATCACAGATGACTGGGACAGGAGACTCTGCAGAACCTATTTAGAGGAATTCATTCGGCCAGAGATGCTAGAAGGAGAGCTCTCCCTGGCCCCGGGGTTCCCACTCCCAGGAAACATGGACTACAGTGGCTATCACCAG
Seq A exon
TATATTGATGCTGAGCTGCCCCCTGAGTCTCCCTACCTATATGGCCTCCATCCAAACGCCGAGATTGGCTTCCTGACCCAGACATCGGAAAAACTCTTCCGAACCGTGCTGGAGATGCAGCCTCGGGACAGCCAGGCTGGAGATGGAGCTGGCATCACAAGGGAAGAAAAG
Seq C2 exon
GTCAAAACCTTTCTGGAAGAAATACTGGATCGGATGACAGATGAATTTAACATCGCGGAGCTAATGGCTAAGGTGGAGGAACGCACCCCCTACATTGTAGTTGCCCTCCAGGAGTGTGAACGCATGAACATCCTTACCAGAGAGATCCAGCGCTCACTAAGAGAGCTGCATCTTGGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'80-89,'80-87,81-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(14.2=100)
A:
PF0302810=Dynein_heavy=FE(12.6=100)
C2:
PF0302810=Dynein_heavy=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGGAGACTCTGCAGAA
R:
TTCATGCGTTCACACTCCTGG
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types