BtaEX0011635 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31230216-31236915:+
Coord C1 exon
chr19:31230216-31230407
Coord A exon
chr19:31232005-31232175
Coord C2 exon
chr19:31236733-31236915
Length
171 bp
Sequences
Splice sites
3' ss Seq
AGCTTGCCCTTGACTTTCAGTAC
3' ss Score
5.61
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCCCCTACGATGACCTGCGGTACCTCTTCGGTGAGATCATGTACGGGGGCCACATCACCGATGACTGGGACCGGAGACTCTGCAGAACCTACCTGGAGGAGTTCATCAAACCAGAGATGCTACAGGGAGAGCTGGCCCTGGCCCCAGGGTTCCCACTGCCCGGCAACATGGACTACAATGCCTACCACCAG
Seq A exon
TACATCGATGCCCAGCTGCCCCCAGAGTCGCCCTACCTCTACGGCCTCCACCCGAACGCTGAGATTGGCTTCCTGACCCAAACATCGGAGAAGCTCTTTCGCACAGTGCTGGAGCTGCAGCCCCGGGACAGCCAGGCTGGAGAAGGAGCAGGGGCTGTGAGAGAAGAAAAG
Seq C2 exon
GTCAAGGCGGTCCTGGAGGAAATACTGGAGCGGGTGACAGATGAGTTTAACCTCCCAGAGCTGATGGCCAGGGCGGAGGAGCGCACCCCCTACGTGGCCGTGATGCTCCAGGAGTGCGAGCGGATGAACGTGCTCACCAGACAGATGCAGCGCTCCTTGCGGGAGCTGGACCTTGGACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'89-99,'89-98,90-99
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.9=100)
A:
PF0302810=Dynein_heavy=FE(8.0=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCTACAGGGAGAGCTGG
R:
TTAGTCCAAGGTCCAGCTCCC
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development