MmuEX6083457 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119122031-119133543:-
Coord C1 exon
chr12:119133424-119133543
Coord A exon
chr12:119125145-119125387
Coord C2 exon
chr12:119122031-119122213
Length
243 bp
Sequences
Splice sites
3' ss Seq
ACGTTTCTTTGTGGTTAAAGATC
3' ss Score
4.73
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCCCATGGGAAGACCTCCGTTACCTCTTTGGGGAGATCATGTATGGGGGCCACATCACAGATGCCTGGGATCGAAAACTATGCCGGGTGTATCTAGAAGAATTCATGAATCCATCTCTG
Seq A exon
ATCGAGGATGAAGTCATGCTGGCACCAGGATTTGCAGCCCCTCCCTACTCAGATTATTCTGGTTATCACCAGTACATAGAGGACACGTTGCCTCCAGAAAGCCCGGCACTGTATGGTCTCCACCCCAATGCTGAAATAGAGTTACTAACAGTGACATCCAACACGCTCTTCAGAACTCTGCTGGAGATGCAACCCAGGAATGCAGTCAGCCAAGAGGAACTGGGGCAGTCTACAGAAGACAAG
Seq C2 exon
GTTAAGAATATCTTGGATGACATTTTGGAGAGACTTCCAGAAGAGTTCAACATGGCAGAAATAATGCAAAAGAACCCAAATAGAAGCCCGTATGTTCTCGTTTGCTTTCAAGAGTGTGAGAGGATGAACGTTCTCATCCGGGAAATCCGTGTGTCGCTTCAACACTTAGACCTTGGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'79-80,'79-79,80-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
PF0302810=Dynein_heavy=FE(11.4=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGGGAAGACCTCCGTTA
R:
ACCAAGGTCTAAGTGTTGAAGCG
Band lengths:
295-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: