DreEX6020720 @ danRer10
Exon Skipping
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10534883-10540827:-
Coord C1 exon
chr6:10540372-10540827
Coord A exon
chr6:10537593-10537771
Coord C2 exon
chr6:10534883-10535103
Length
179 bp
Sequences
Splice sites
3' ss Seq
AGCTGGGGTTGTTTCTGCAGTGG
3' ss Score
5
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTTTCTGATCTGCACCATTAGCTCATTTCTTTATCATCATGGAGGGCCTGTATGTGTCCATCCATGGCCTTAACGTCACCCACAGCCCTCTCGGAGCGCCAGCCATGTCCATAGACAAGCTTTTCCCTGCCCTGCTGGAGTGCTTCGGCATCATCCTGTGCGGTTACGCGGCAGGTCGCAGTGGCATCATCAGCGCGGCGCAGGTCAACGGTCTGGGCAGCTTCGTGTCGTGTTTCGCTCTCCCTGCGCTGCTTTTCAAGAACATGGTGCAGCTGCAGTTCCAGCACGTCGTCTGGTCTTTTCTGTGGAGTGTTTTGATCGCAAAAGTGTGCGTGTTCACGCTGGTGTGTGTGCTGACGCTGCTGGTGGCTGATCCTGAGAGCAAGTACAGTAAAGCTGGGCTGTTTGCTATCTTCGCCACGCAGAGCAATGACTTCGCTCTGGGATATCCTATAG
Seq A exon
TGGATGCGCTGTACAGAAACTCTCACTCGGAGTATGAGCAGTACATCTATCTGGTGGCTCCTGTGTCGCTGATGCTCCTCAACCCTGTGGGCTTCGCTCTGTGTGAGATCCAGAGATGGAGACACAGCAGTGATCCAAACTACAGCAAACTGCACGTCATCTTCACCGTCACACTGCAG
Seq C2 exon
GTTTTGAAGAACCCAATAGTCTTCATGGTTATGGTTGGAATTGTCTCTCATTTTGTGTTTGGAGGACGAGTGCCTGTTTTGCTGGGAGAGTTTGTTGATGGACTGGCAGACTCCTTTGGAGGGGCGGCTCTCTTTTATTTGGGCCTGAACATGGTGGGACAGATGAGCAAACTCACGCGTTCCACTGGCGTCTCCCTCATCCTGCTCATCACTGCCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PU(64.7=80.0)
A:
PF0354713=Mem_trans=FE(34.1=100),PF0354713=Mem_trans=PU(13.2=38.3)
C2:
PF0354713=Mem_trans=PD(0.1=0.0),PF0354713=Mem_trans=FE(42.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCAATGACTTCGCTCT
R:
AGTTTGGCAGTGATGAGCAGG
Band lengths:
256-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]