DreEX6020739 @ danRer10
Exon Skipping
Gene
ENSDARG00000006639 | lnpb
Description
limb and neural patterns b [Source:ZFIN;Acc:ZDB-GENE-030131-9455]
Coordinates
chr6:10610566-10613853:-
Coord C1 exon
chr6:10613748-10613853
Coord A exon
chr6:10613592-10613662
Coord C2 exon
chr6:10610566-10610730
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTTTATCTTCTTGCTTTCAGATA
3' ss Score
10.58
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTATGCGTCCCCCTGGCCCACCTCTCGCTCGACCCATCCTTCCACGAGAGCGTGGCGCTGTGGACAGAGTCATTGAGTATCTGGTGGGAGATGGACCTCAAAACAG
Seq A exon
ATATGCGTTGATTTGCCAGCAGTGTTTTTCCCACAACGGTATGGCTTTGAAGGAGGAATTTGAGTTTGTAG
Seq C2 exon
CTTTCCGTTGTGCTTATTGCTACTTCATGAACCCTGCGAGAAAAACACGTCCCCAGGCCCCCAGGCTCCCAGAATTCAGTTTTGAGCGCAGGCTGCGCTCTGAATCTCCTGAAACGCAATCTTCTGCCGCCACAGAGACACCGGAGGACAGCGACGCCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006639-'16-14,'16-12,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=0.040 C2=0.701
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PU(31.4=44.4)
A:
PF100584=DUF2296=FE(47.1=100)
C2:
PF100584=DUF2296=PD(19.6=17.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTGGACAGAGTCATTGA
R:
CGGCAGAAGATTGCGTTTCAG
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]