BtaEX0019300 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:21000733-21003422:+
Coord C1 exon
chr2:21000733-21000838
Coord A exon
chr2:21002411-21002481
Coord C2 exon
chr2:21003252-21003422
Length
71 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCCTTTTGCTGTAGGTA
3' ss Score
10.31
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTCTTCATCCTCCTGGTCCACCTTTAGCAAGACCCATTCTGCCTCGAGAACGAGGTGCTCTGGATAGAATTGTTGAATATTTAGTTGGTGATGGTCCACAGAACAG
Seq A exon
GTACGCCCTTATATGTCAGCAGTGTTTTTCTCACAATGGCATGGCTTTGAAAGAAGAATTTGAGTACATTG
Seq C2 exon
CTTTTCGTTGTGCCTACTGTTTTTTCTTGAATCCTGCTAGAAAAACCAGACCCCAGGCTCCAAGACTTCCAGAATTTAGTTTTGAAAAGAGGCAGGCATTGGAAGTCTCAAATACAGTTGGTTCCTTGCCCTCAGAAAGTGTAATTTCATCAGAGAACCAGATCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061-'23-22,'23-21,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.454
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PU(31.4=44.4)
A:
PF100584=DUF2296=FE(47.1=100)
C2:
PF100584=DUF2296=PD(19.6=17.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCCTCCTGGTCCACCT
R:
TCTGGAAGTCTTGGAGCCTGG
Band lengths:
177-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development