MmuEX6102221 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74529631-74531981:-
Coord C1 exon
chr2:74531876-74531981
Coord A exon
chr2:74530506-74530576
Coord C2 exon
chr2:74529631-74529801
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCTCTGTGGTGTAGGTA
3' ss Score
9.26
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCCTTCACCCTCCAGGTCCACCTTTAGCAAGACCCATTCTCCCCCGAGAACGAGGTGCTCTGGATAGAATTGTTGAATACTTAGTTGGTGATGGTCCACAGAACAG
Seq A exon
GTACGCCCTCATATGTCAGCAGTGTTTTTCTCACAATGGCATGGCTTTGAAGGAAGAATTTGAATATATTG
Seq C2 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCTCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTGGAAGGCTCAAGCTCAACTGGTCCCACGCTACTAGAAAGTGTGCCCTCAGCAGAAAGCCAGCTCATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PU(31.4=44.4)
A:
PF100584=DUF2296=FE(47.1=100)
C2:
PF100584=DUF2296=PD(19.6=17.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCAAGACCCATTCTCCCCC
R:
CACTGCCTGCCTCTTCTCAAA
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types