RnoEX0050296 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61441698-61444093:-
Coord C1 exon
chr3:61443988-61444093
Coord A exon
chr3:61442582-61442652
Coord C2 exon
chr3:61441698-61441868
Length
71 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCCTTGTGATACAGGTA
3' ss Score
8.08
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCCTTCATCCTCCAGGCCCACCTTTAGCAAGACCCGTTCTCCCCCGAGAACGAGGTGCTCTGGATAGAATTGTTGAATATTTAGTTGGTGATGGCCCACAGAACAG
Seq A exon
GTACGCCCTCATATGTCAGCAGTGTTTTTCTCACAATGGTATGGCTTTGAAGGAAGAATTTGAATATATTG
Seq C2 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCCCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTAGAAGGCTCAAGTTCAACTGGTCCCATGTTACTAGAAAGTGTGCCCTCACCAGAAAACCAGCTCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'21-15,'21-14,22-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.000 C2=0.603
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PU(31.4=44.4)
A:
PF100584=DUF2296=FE(47.1=100)
C2:
PF100584=DUF2296=PD(19.6=17.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTGGTGATGGCCCACAGA
R:
GTTTTCTGGTGAGGGCACACT
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]