GgaEX0013634 @ galGal3
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17510357-17512568:+
Coord C1 exon
chr7:17510357-17510462
Coord A exon
chr7:17511092-17511162
Coord C2 exon
chr7:17512398-17512568
Length
71 bp
Sequences
Splice sites
3' ss Seq
TAAGTATTAATGTTTTCTAGGTA
3' ss Score
7.48
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCTTCATCCTCCAGGCCCTCCTTTAGCGAGACCTATTCTTCCTCGAGAAAGAGGAGTTGTGGATAGAGTTATTGAGTATTTGGTTGGAGATGGTCCTCAGAACAG
Seq A exon
GTATGCCCTTATATGTCAGCAATGTTGTTCTCACAATGGTATGGCTCTGAAGGAGGAGTTTGAATACGTAG
Seq C2 exon
CATTTAGGTGTGCCTACTGCTTTTTCCTGAATCCTGCAAGAAAAACGAGACCTCGGGCTCCACGGCTACCAGATTTCAATTTTGAAAAGAAGCAACTTCCAGAATTGCAATCGGAAGCAGAGCGTCCAGAATCAAGAGAGAGAGAACCGCAGGGGAATCAGCAGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'18-21,'18-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.257
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PU(31.4=44.4)
A:
PF100584=DUF2296=FE(47.1=100)
C2:
PF100584=DUF2296=PD(19.6=28.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCCAGGCCCTCCTTTA
R:
GAAATCTGGTAGCCGTGGAGC
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]