DreEX6020794 @ danRer10
Exon Skipping
Gene
ENSDARG00000074723 | myo10l1
Description
myosin X-like 1 [Source:ZFIN;Acc:ZDB-GENE-080425-1]
Coordinates
chr6:10905437-10905920:-
Coord C1 exon
chr6:10905820-10905920
Coord A exon
chr6:10905663-10905729
Coord C2 exon
chr6:10905437-10905529
Length
67 bp
Sequences
Splice sites
3' ss Seq
CAATGAGTTGTGTTGTGCAGGGA
3' ss Score
3.81
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTCAACCGTTTTGAGCAGTTCAACATTAATTACGCCAATGAGAAACTTCAAGAATATTTCAACAAACACATCTTCTCTTTGGAGCAACTGGAGTACAACAG
Seq A exon
GGAAGGAATTCATTGGGAAGCCATTGACTGGATGGACAATGCAGAATGTCTGGATCTGATCGAGAAG
Seq C2 exon
AAATTGGGCATGTTAGCTTTGGTTAATGAGGAGAGCAGATTTCCCAAAGGCACTGACTTCACCTTGCTGGAGAAACTACACGGCAGACACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074723-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACCGTTTTGAGCAGTTCA
R:
GCAAGGTGAAGTCAGTGCCTT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]