RnoEX0057138 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77998559-77999467:+
Coord C1 exon
chr2:77998559-77998659
Coord A exon
chr2:77998770-77998836
Coord C2 exon
chr2:77999375-77999467
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTTCTTCCCCCAGAGA
3' ss Score
11.56
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTAACCACTTTGAGCAGTTCAATATCAACTATGCAAATGAGAAGCTTCAGGAATACTTCAACAAGCACATTTTTTCTTTAGAACAACTAGAATATAGCAG
Seq A exon
AGAAGGATTGGTGTGGGAAGATATTGACTGGATAGACAATGGAGAATGCCTAGACTTGATCGAGAAG
Seq C2 exon
AAACTTGGCCTCCTTGCCTTGATCAATGAAGAGAGCCATTTTCCTCAAGCCACAGACAGCACTTTGTTGGAGAAGTTACACAATCAACATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'20-24,'20-23,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAACCACTTTGAGCAGTTCA
R:
ACAAAGTGCTGTCTGTGGCTT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]