DreEX6028682 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42794974-42795427:-
Coord C1 exon
chr2:42795327-42795427
Coord A exon
chr2:42795157-42795223
Coord C2 exon
chr2:42794974-42795066
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGCGTGTGTTTTGCGTATAGAGA
3' ss Score
5.64
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTCAACCGCTTTGAGCAGTTCAACATTAACTATGCAAACGAGAAGCTTCAGGAGTATTTCAACAAGCACATTTTCTCACTGGAGCAGCTTGAGTACAACAA
Seq A exon
AGAAGGGCTGGTCTGGGATGATGTTAACTGGATGGACAATGGAGAATGCCTGGATCTGATAGAGAAG
Seq C2 exon
AAGTTGGGTTTGCTCGCTCTTGTGAATGAGGAAAGTCATTTTCCTAAAGGCACTGATGGCACACTTCTAGAGAAACTCCACAGCCAACATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'17-13,'17-12,18-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCGCTTTGAGCAGTTCA
R:
GAAGTGTGCCATCAGTGCCTT
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]