GgaEX1037950 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75573195-75575681:+
Coord C1 exon
chr2:75573195-75573295
Coord A exon
chr2:75573541-75573607
Coord C2 exon
chr2:75575589-75575681
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCTTATTTTCCTTAGGGA
3' ss Score
9.3
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGAACCGTTTTGAACAGTTCAATATTAACTATGCAAATGAAAAGCTCCAGGAGTATTTCAATAAGCACATTTTTTCTTTGGAACAACTGGAATACAGCAG
Seq A exon
GGAAGGTCTGGTTTGGGAGGATATTGACTGGACAGACAATGGCGAATGCTTGGATCTTATTGAAAAG
Seq C2 exon
AAACTTGGCCTGCTGGCACTCATCAATGAAGAAAGCCATTTCCCTCAGGCTACTGACTCCACTTTACTGGAGAAGCTGAATGCCCAGCATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'28-24,'28-23,29-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCAAATGAAAAGCTCCAGGA
R:
CTGGGCATTCAGCTTCTCCAG
Band lengths:
160-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]