GgaEX1037950 @ galGal3
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77278239-77281575:+
Coord C1 exon
chr2:77278239-77278339
Coord A exon
chr2:77278585-77278651
Coord C2 exon
chr2:77281483-77281575
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCTTATTTTCCTTAGGGA
3' ss Score
9.3
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGAACCGTTTTGAACAGTTCAATATTAACTATGCAAATGAAAAGCTCCAGGAGTATTTCAATAAGCACATTTTTTCTTTGGAACAACTGGAATACAGCAG
Seq A exon
GGAAGGTCTGGTTTGGGAGGATATTGACTGGACAGACAATGGCGAATGCTTGGATCTTATTGAAAAG
Seq C2 exon
AAACTTGGCCTGCTGGCACTCATCAATGAAGAAAGCCATTTCCCTCAGGCTACTGACTCCACTTTACTGGAGAAGCTGAATGCCCAGCATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCAAATGAAAAGCTCCAGGA
R:
CTGGGCATTCAGCTTCTCCAG
Band lengths:
160-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]