DreEX6022740 @ danRer10
Exon Skipping
Gene
ENSDARG00000019614 | jade3
Description
jade family PHD finger 3 [Source:ZFIN;Acc:ZDB-GENE-030131-928]
Coordinates
chr6:37511054-37517391:-
Coord C1 exon
chr6:37517201-37517391
Coord A exon
chr6:37513359-37513570
Coord C2 exon
chr6:37511054-37511221
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCTGTATATTCTGTTTTCAGGTG
3' ss Score
10.82
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATAATCACAGAGAAGCCAAAGGAAGTGCTCTTCTCCAAACCAAGGAAATATATTCAGTGCTGGAGTCAGGACTCCACAGAGACGGGCTACGTCAACATTAAGGAGCTGGCGGAGGCTATGTGCAGATACGACCTGGACGATATGGATTTGTACTGGCTCCAGCAGCTCAATGCAGAGCTGGGGATGATGG
Seq A exon
GTGATGGAGTGGTGGATGAACTGACGATGGAGCGGGTGATGGAGGCACTGGAGAGACAGTGTCATGAAAACATGAACCACGCCATCGAGACCGAGGAAGGTTTGGGTATCGAGTATGACGAGGACGTCATCTGTGATGTGTGTCGCTCACCTGACAGCGAGGAGGGCAATGATATGGTGTTTTGTGACAAGTGCAACATTTGCGTGCACCAG
Seq C2 exon
GCCTGCTATGGCATTGTGAAGGTGCCAGATGGGAACTGGCTGTGCAGAACGTGTGTGCTTGGCATCACTCCTCAGTGCCTTCTGTGTCCTAAAACGGGAGGCGCAATGAAAGCCACCAGAGCTGGCACTAAATGGGCTCATGTTAGCTGTGCCCTCTGGATACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019614-'12-10,'12-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(43.5=100)
A:
PF105134=EPL1=PD(12.9=26.8),PF0013017=C1_1=PU(81.2=73.2),PF138311=PHD_2=PU(42.9=21.1)
C2:
PF0013017=C1_1=PD(15.6=17.9),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Skipping Isoform:
ENSDART00000023163fB3367
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGGACTCCACAGAGACG
R:
TCAGGTATCCAGAGGGCACAG
Band lengths:
294-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]