HsaEX0046974 @ hg19
Exon Skipping
Gene
ENSG00000102221 | PHF16
Description
PHD finger protein 16 [Source:HGNC Symbol;Acc:22982]
Coordinates
chrX:46884126-46893190:+
Coord C1 exon
chrX:46884126-46884316
Coord A exon
chrX:46887294-46887505
Coord C2 exon
chrX:46893023-46893190
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTATTTCTGTGCAGGTT
3' ss Score
10.41
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GATTATAGCTGAGAAGGTAAAGGACGTTCTGTTTATCCGACCCCGGAAGTATATTCACTGCTCCAGCCCAGACACCACAGAGCCTGGCTACATCAACATCATGGAGTTGGCAGCATCTGTTTGCCGCTATGACCTAGATGACATGGACATCTTCTGGCTTCAGGAACTCAATGAAGACCTTGCAGAAATGG
Seq A exon
GTTGTGGGCCAGTTGATGAGAATCTTATGGAAAAGACAGTAGAAGTCCTGGAACGCCATTGCCATGAAAATATGAACCATGCTATTGAGACAGAGGAAGGGCTAGGCATAGAGTATGATGAAGATGTGATCTGTGATGTGTGCCGGTCTCCAGACAGTGAAGAAGGGAATGATATGGTGTTCTGTGATAAGTGTAACGTCTGTGTGCATCAG
Seq C2 exon
GCCTGCTATGGCATCCTCAAGGTCCCAGAAGGCAGCTGGCTGTGTCGCTCCTGTGTCCTGGGCATTTATCCGCAATGTGTGTTATGTCCAAAGAAAGGTGGAGCCCTGAAGACCACCAAGACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTGTGGATCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102221_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(17.6=90.5)
A:
PF105134=EPL1=PD(12.8=26.8),PF0013017=C1_1=PU(75.9=62.0),PF138311=PHD_2=PU(42.9=21.1)
C2:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTGTTTATCCGACCCCG
R:
AGTCCCTGTCTTGGTGGTCTT
Band lengths:
296-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)